SubtiBank SubtiBank
yycR [2018-02-13T01:00:15.000Z]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

yycR [2018-02-13T01:00:15.000Z]

similar to formaldehyde dehydrogenase
locus
BSU40250
pI
5.79
mw
42.79 kDa
protein length
408 aa Sequence Blast
gene length
1224 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    4,135,798 → 4,137,024

    The protein

    Paralogous protein(s)

  • [protein|EA4CC0D36C39957DBBF9B1B11F65F33E8CD81FFE|AdhB] (33%),alcohol dehydrogenase

    • Structure

  • [PDB|4JLW] (from Pseudomonas aeruginosa) [pubmed|23989142]

    • Expression and Regulation

    Operons

    genes
    [gene|7F4C5AD47D167683F96CC2841039512E70CC4F1C|yycR]
    description
    [pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-B816 (yycR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1815 NBRP B. subtilis, Japan]
  • BKE40250 (Δ[gene|7F4C5AD47D167683F96CC2841039512E70CC4F1C|yycR]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE40250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCATGTGTTTGGACTCT, downstream forward: _UP4_TAAAAGAAAAAGCCGGACGT
  • BKK40250 (Δ[gene|7F4C5AD47D167683F96CC2841039512E70CC4F1C|yycR]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK40250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCATGTGTTTGGACTCT, downstream forward: _UP4_TAAAAGAAAAAGCCGGACGT

    • References

    Research papers

  • 23989142